Resumen La ganadería de rumiantes es considerada una de las mayores fuentes antropogénicas del gas metano (CH4). La metanogénesis es parte del proceso digestivo de estos animales y es mediada por los microorganismos presentes en el rumen, responsables no sólo de la pérdida de energía en el animal, que impacta directamente en la productividad del ganado, sino también de la producción del metano que contribuye al incremento del efecto invernadero. Las características funcionales del microbioma del rumen no han sido bien descritas debido a que la mayoría de los microorganismos presentes no son cultivables en condiciones de laboratorio, pero pueden ser estudiados mediante técnicas moleculares, como la metagenómica y la metatranscriptómica. Este artículo de revisión tiene como objetivos además de compilar y difundir la información del impacto ambiental por la industria ganadera, describir algunas de las estrategias experimentales y bioinformáticas que se utilizan en el análisis del microbioma ruminal desde la metagenómica y la metatranscriptómica, para reducir las emisiones de metano por el ganado.

Abstract Ruminant livestock is considered one of the largest anthropogenic sources of methane gas. Methanogenesis is part of the digestive process of these animals and is mediated by the microorganisms present in their rumen, responsible not only for the loss of energy in the animal, which directly impacts the productivity of cattle, but also for the production of methane that contributes to the increase of the greenhouse effect. The functional characteristics of the rumen microbiome have not been well described because most of the microorganisms present are not cultivable under laboratory conditions, but can be studied using molecular techniques, such as metagenomics and metatranscriptomics. The objectives of this review article, in addition to compiling and disseminating information on the environmental impact of the livestock industry, are to describe some of the experimental and bioinformatic strategies used in the analysis of the ruminal microbiome from metagenomics and metatranscriptomics, to reduce emissions of methane by cattle.

RESUMEN Los ostrácodos son microcrustáceos acuáticos, que poseen un caparazón bivalvo de carbonato de calcio que se puede preservar en los sedimentos de los ambientes lacustres. Debido a su alta sensibilidad a cambios ambientales y su alta potencialidad de fosilización, los ostrácodos son una herramienta útil para el estudio paleoclimático y paleoambiental, abarcando una temporalidad de décadas hasta millones de años. El conocimiento ecológico de las especies, así como su taxonomía son prerrequisitos para estos estudios. Sin embargo, esta información es aún escasa en diferentes regiones del mundo, incluyendo los Neotrópicos. Hasta el momento, se han realizado únicamente estudios en los lagos kársticos de las tierras bajas de la Península de Yucatán, en el norte del Neotrópico. Sin embargo, los lagos en altitudes medias y altas permanecen poco conocidos. El objetivo de este trabajo es aportar conocimiento de ostrácodos no-marinos neotropicales a lo largo de un gradiente altitudinal que va desde las tierras bajas de El Petén, Guatemala (100-500 m s.n.m.), incluyendo los lagos de tierras medias de la Selva Lacandona (500-1 000 m s.n.m.), hasta las tierras altas de Montebello, Chiapas, México (1 000-1 500 m s.n.m.). Dieciocho especies de ostrácodos se identificaron en 24 lagos, pero estuvieron ausentes en los lagos Amarillo y Lacandón (tierras medias) y San Diego (tierras bajas). La ausencia de ostrácodos podría explicarse por la falta de un muestreo estacional o por variables que no se consideraron en este estudio como sustrato, cobertura vegetal acuática e interacciones interespecíficas. Los análisis estadísticos indicaron que las especies más abundantes son: Cypridopsis vidua (O.F. Müller, 1776), Cytheridella ilosvayi (Daday, 1905), Pseudocandona antillana (Broodbakker, 1983) y Darwinula stevensoni (Brady & Robertson, 1870), con una distribución continua a lo largo del gradiente altitudinal. Algunas especies presentan una distribución más restringida, determinada por la temperatura, precipitación y conductividad. Por ejemplo, Eucypris sp. está restringida a las tierras bajas; mientras que Vestalenula sp. y Cypria sp. se encontraron únicamente en elevaciones medias. La diversidad de especies es ligeramente mayor en lagos cálidos a altitudes medias (Haverage = 1.09) que en las tierras bajas (Haverage = 0.94) y que en lagos de agua más fría en las tierras altas (Haverage = 0.94), sugiriendo que los lagos de tierras medias tienen un alto potencial para albergar micro-refugios. Las regresiones LOESS muestran las preferencias ecológicas de las cuatro especies más frecuentes y altamente distribuidas con respecto a la temperatura, conductividad, HCO3 -, precipitación y pH. Darwinula stevensoni se asocia a temperaturas frías y conductividades bajas, lo que evidencia su alto rango de tolerancia. Cypridopsis vidua se asocia con ambientes cálidos y de baja precipitación, como los registrados en las tierras bajas de Guatemala, y puede usarse como paleobioindicador de zonas de vegetación litoral. Cytheridella ilosvayi es un indicador de condiciones cálidas y húmedas, mientras que P. antillana de frías y húmedas. Esta información ecológica-cuantitativa se podrá utilizar como una herramienta para las reconstrucciones paleoambientales basadas en ostrácodos en el sur de México y norte de Guatemala. Además, este enfoque sirve como modelo para futuros estudios paleoecológicos que emplean otros bioindicadores acuáticos, como las amebas testadas, los cladóceros y los quironómidos.

Abstract Detailed knowledge of species ecological preferences and robust taxonomy of paleobioindicators are prerequisites for accurate paleoclimate and paleoenvironmental studies. This study aims to expand the knowledge of modern, Neotropical freshwater ostracode fauna, across an altitudinal gradient from the karst lakes in the lowlands of El Petén, Guatemala (100-500 m.a.s.l.), to the mid-elevation lakes of the Lacandón forest (500-1 000 m.a.s.l.), to the higher-altitude lakes of Montebello, Chiapas, Mexico (1 000-1 500 m.a.s.l.). Eighteen ostracode species were identified in 24 lakes. Ostracodes were absent in Lakes Amarillo and Lacandón (mid-altitude), and San Diego (lowlands); probably explained by a structural difference of habitats and species interactions. Statistical analysis indicated that the most abundant species, Cypridopsis vidua (O.F. Müller, 1776), Cytheridella ilosvayi (Daday, 1905), Pseudocandona antillana (Broodbakker, 1983), and Darwinula stevensoni (Brady & Robertson, 1870) have a continuous distribution along the entire altitudinal gradient. Some species display more restricted distributions, determined by temperature, precipitation and conductivity. For example, Eucypris sp. is restricted to the lowlands, Vestalenula sp. and Cypria sp. were found only at middle elevations. Species diversity is slightly greater in lakes at middle altitudes (Haverage = 1.09) than in water bodies in the lowlands (Haverage = 0.94) and in cooler lakes in the highlands (Haverage = 0.94), suggesting that mid-elevation lakes have a high potential for harboring microrefugia. Locally weighted scatterplot smoothing (LOESS regressions) provided ecological preference information for the four most frequent and widely distributed species, with respect to temperature, conductivity, bicarbonate (HCO3 -) concentration, precipitation, and pH. Darwinula stevensoni suggest an association more to cooler temperatures and lower conductivities proving its high tolerance range. Cypridopsis vidua is associated with warm and low-rainfall environments, such as recorded in the lowlands of Guatemala, and can be used as a paleobioindicator of vegetated littoral zones, because we found it always associated to this section of lakes. Cytheridella ilosvayi show preferences for warm and humid conditions, whereas P. antillana prefer colder and humid environments. Such quantitative-ecological information will improve ostracode-based paleoenvironmental reconstructions in Southern Mexico and Northern Guatemala. In addition, our approach serves as a model for future paleoecological studies that employ other aquatic bioindicators, such as testate amoebae, cladocerans, and chironomids.

Seventeen variables were evaluated as possible risk factors for the intradomiciliary infestation with Triatoma dimidiata in 644 houses in Jutiapa, Guatemala. During 2004 the houses were assessed for vector presence and evaluated for hygiene, cluttering, material comfort, construction conditions and number of inhabitants, among other factors. Chi-square analysis detected significant associations between vector presence and eight variables related to domestic sanitary and construction conditions. Log-linear models showed that regardless of the age of the house, the odds of vector presence were 4.3 and 10 times lower in houses with a good socioeconomic status compared with poor and very poor houses respectively. Log-linear models also pointed to a greater chance of vector presence when walls lacked plastering (3.85 times) or walls had low quality-incomplete plastering (4.56 times), compared with walls that were completely plastered. Control strategies against T. dimidiata should include the introduction of better-quality but inexpensive plastering formulations and better sanitation practices should also be promoted among the population. Such control strategies should not only reduce or eliminate infestation, but also prevent vector reinfestation.

Seiscientas cuarenta y cuatro casas en Jutiapa, Guatemala fueron encuestadas en el año 2004 para buscar el vector de la enfermedad de Chagas Triatoma dimidiata. Diecisiete variables relacionadas con las condiciones estructurales y de higiene de las casas fueron registradas y evaluadas como factores de riesgo para la infestación intradomiciliar con T. dimidiata. Análisis chi-cuadrado detectaron asociaciones significativas entre la presencia del vector y 8 de estas variables. En modelos log-lineares se detectó, que sin importar la antigüedad de la casa, las posibilidades de presencia del vector fueron 4,3 y 10 veces más bajas en casas con un buen estado socioeconómico que en casas pobres o muy pobres, respectivamente. Además, las posibilidades de infestación fueron mayores en casas con paredes sin repello (3,85 veces) o con repellado incompleto o de mala calidad (4,56 veces), que con repellado completo. Las estrategias para el control de T. dimidiata deberían incluir la introducción de repellos baratos y de buena calidad y la promoción de mejores prácticas sanitarias. Estas estrategias no solo reducirían o eliminaría la infestación, sino también ayudaría a prevenir la reinfestación.

A degradação ou ausência de reboco nas paredes e as condições higiênicas deficientes são os fatores de risco mais importantes para a infestação intradomiciliar por Triatoma dimidiata na Guatemala. Realizamos um estudo transdisciplinar sobre infestação por T. dimidiata, higiene intradomiciliar e condições de construção. O estudo destacou as questões de materiais locais e aspectos culturais (inclusive papéis de gênero) que poderiam levar a melhorias nas condições das paredes no longo prazo. Formulou-se uma nova mistura de gesso para paredes, após estudos de laboratório sobre materiais de construção com base em recomendações dos residentes locais. Foram estudados quatro vilarejos com infestação por T. dimidiata que havia persistido mesmo após aplicação de inseticida. Em duas comunidades, foi implementada uma abordagem ecossistêmica, e os residentes implementaram melhorias nas paredes e no saneamento domiciliar, com o apoio da equipe interdisciplinar (intervenção ecossistêmica). Nas duas outras comunidades, adotou-se uma estratégia de controle com base na aplicação de inseticida (intervenção tradicional). Ambas as intervenções levaram a uma redução na infestação por T. dimidiata, mas apenas a abordagem ecossistêmica produziu melhorias importantes nas condições de moradia (saneamento e revestimento das paredes) capazes de prevenir a re-infestação por T. dimidiata no longo prazo.

The deterioration or absence of plaster walls in houses and poor hygienic conditions are the most important risk factors for indoor Triatoma dimidiata infestation in Guatemala. A cross-disciplinary study was conducted addressing T. dimidiata infestation, household hygiene, and housing construction. The study focused on local materials and cultural aspects (including gender roles) that could lead to long-term improvements in wall construction. A new plaster mix for walls was developed on the basis of laboratory studies on construction materials recommended by local villagers. Four villages with persistent (post-spraying) T. dimidiata infestation were studied. In two villages, an ecosystem approach was implemented, and the homeowners conducted wall improvements and household sanitation with the support of the interdisciplinary team (the ecosystem intervention). In the other two villages, a vector control approach based on insecticide spraying was adopted (traditional intervention). Both interventions were associated with a reduction in T. dimidiata infestation, but only the ecosystem approach produced important housing improvements (sanitation and wall construction) capable of preventing T. dimidiata re-infestation in the long term.

Seventeen variables were evaluated as possible risk factors for the intradomiciliary infestation with Triatoma dimidiata in 644 houses in Jutiapa, Guatemala. During 2004 the houses were assessed for vector presence and evaluated for hygiene, cluttering, material comfort, construction conditions and number of inhabitants, among other factors. Chi-square analysis detected significant associations between vector presence and eight variables related to domestic sanitary and construction conditions. Log-linear models showed that regardless of the age of the house, the odds of vector presence were 4.3 and 10 times lower in houses with a good socioeconomic status compared with poor and very poor houses respectively. Log-linear models also pointed to a greater chance of vector presence when walls lacked plastering (3.85 times) or walls had low quality-incomplete plastering (4.56 times), compared with walls that were completely plastered. Control strategies against T. dimidiata should include the introduction of better-quality but inexpensive plastering formulations and better sanitation practices should also be promoted among the population. Such control strategies should not only reduce or eliminate infestation, but also prevent vector reinfestation.

Seiscientas cuarenta y cuatro casas en Jutiapa, Guatemala fueron encuestadas en el año 2004 para buscar el vector de la enfermedad de Chagas Triatoma dimidiata. Diecisiete variables relacionadas con las condiciones estructurales y de higiene de las casas fueron registradas y evaluadas como factores de riesgo para la infestación intradomiciliar con T. dimidiata. Análisis chi-cuadrado detectaron asociaciones significativas entre la presencia del vector y 8 de estas variables. En modelos log-lineares se detectó, que sin importar la antigüedad de la casa, las posibilidades de presencia del vector fueron 4,3 y 10 veces más bajas en casas con un buen estado socioeconómico que en casas pobres o muy pobres, respectivamente. Además, las posibilidades de infestación fueron mayores en casas con paredes sin repello (3,85 veces) o con repellado incompleto o de mala calidad (4,56 veces), que con repellado completo. Las estrategias para el control de T. dimidiata deberían incluir la introducción de repellos baratos y de buena calidad y la promoción de mejores prácticas sanitarias. Estas estrategias no solo reducirían o eliminaría la infestación, sino también ayudaría a prevenir la reinfestación.

A degradação ou ausência de reboco nas paredes e as condições higiênicas deficientes são os fatores de risco mais importantes para a infestação intradomiciliar por Triatoma dimidiata na Guatemala. Realizamos um estudo transdisciplinar sobre infestação por T. dimidiata, higiene intradomiciliar e condições de construção. O estudo destacou as questões de materiais locais e aspectos culturais (inclusive papéis de gênero) que poderiam levar a melhorias nas condições das paredes no longo prazo. Formulou-se uma nova mistura de gesso para paredes, após estudos de laboratório sobre materiais de construção com base em recomendações dos residentes locais. Foram estudados quatro vilarejos com infestação por T. dimidiata que havia persistido mesmo após aplicação de inseticida. Em duas comunidades, foi implementada uma abordagem ecossistêmica, e os residentes implementaram melhorias nas paredes e no saneamento domiciliar, com o apoio da equipe interdisciplinar (intervenção ecossistêmica). Nas duas outras comunidades, adotou-se uma estratégia de controle com base na aplicação de inseticida (intervenção tradicional). Ambas as intervenções levaram a uma redução na infestação por T. dimidiata, mas apenas a abordagem ecossistêmica produziu melhorias importantes nas condições de moradia (saneamento e revestimento das paredes) capazes de prevenir a re-infestação por T. dimidiata no longo prazo.

The deterioration or absence of plaster walls in houses and poor hygienic conditions are the most important risk factors for indoor Triatoma dimidiata infestation in Guatemala. A cross-disciplinary study was conducted addressing T. dimidiata infestation, household hygiene, and housing construction. The study focused on local materials and cultural aspects (including gender roles) that could lead to long-term improvements in wall construction. A new plaster mix for walls was developed on the basis of laboratory studies on construction materials recommended by local villagers. Four villages with persistent (post-spraying) T. dimidiata infestation were studied. In two villages, an ecosystem approach was implemented, and the homeowners conducted wall improvements and household sanitation with the support of the interdisciplinary team (the ecosystem intervention). In the other two villages, a vector control approach based on insecticide spraying was adopted (traditional intervention). Both interventions were associated with a reduction in T. dimidiata infestation, but only the ecosystem approach produced important housing improvements (sanitation and wall construction) capable of preventing T. dimidiata re-infestation in the long term.